Comments (8)
I was thinking more like this:
https://zhong-lab-ucsd.github.io/GIVE_homepage/
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Check out Biojs, it may help.
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Will do, thanks!
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https://ebi-uniprot.github.io/ProtVista/userGuide.html
i think this is what conrad wants - its a specfic biojs tool.
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I think this only shows amino acid position rather than genomic location but i'll look into it.
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We've discuss this today. It appears that we need more time to research about it. We'll move ahead and create the search form and functions first while Anastasia takes her time to read up more about the topic.
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Hey @Anastasia-pav Arslan and Abi found out about the ncbi sequence viewer. Have a look at this:
https://www.ncbi.nlm.nih.gov/projects/sviewer/
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Collectively agreed on UCSC genome browser with unirpot modified residues track. I have produced urls for each entry and added to Final_Phosphosite_genomic_locations.csv. The code for this is added to Genomic_locations_merge.ipynb. The code for embedding the UCSC browser into website is provided in app/templates/GB_Test.html.
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Related Issues (20)
- change function code to return protein name and gene aliases. HOT 2
- Issue with 'Function to return the inhibitors from a kinase'. HOT 6
- Inhibitor search bar HOT 19
- Create function to query database by inhibitor query HOT 3
- Genomic location data HOT 2
- User Data Input: parameters HOT 2
- Inhibitor csv MK II HOT 2
- Data mining: kinase names and aliases
- Data mining: genomic location of phosphosites
- Data mining: subcellular location
- Data mining: inhibitors
- Data mining: Phosphosites
- Database
- Genome browser analysis
- Create functions for phosphosites search HOT 7
- Possible alternate phosphosite search page HOT 2
- Functions for inhibitor pages MKII HOT 6
- Issues with running app.py on Windows HOT 1
- Phosphosite pages HOT 10
- Design: VMC HOT 5
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