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advanced-shiny

Shiny tips & tricks for improving your apps and solving common problems

bcbio-nextgen

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

bioformats

Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.

biomine

Bioinformatics data-mining

bwa

Burrow-Wheeler Aligner for pairwise alignment between DNA sequences

charger

Characterization of Germline variants

client

cloudbiolinux

CloudBioLinux: configure virtual (or real) machines with tools for biological analyses

complexheatmap

make complex heatmaps as well as self define annotation graphics

conda

OS-agnostic, system-level binary package manager and ecosystem

containerproxy

Manage HTTP proxy routes into Docker containers

cp3

Candidate prion prediction pipeline

dqshiny

Enhance Shiny Apps with Customizable Modules

eternal-lands

fung-keenan2013

This repository contains the Mathematica and R code from Fung and Keenan 2013

gemini

a lightweight db framework for disease and population genetics.

genabel

:exclamation: This is a read-only mirror of the CRAN R package repository. GenABEL — genome-wide SNP association analysis. Homepage: http://www.genabel.org, http://forum.genabel.org,<U+000a>http://genabel.r-forge.r-project.org/ Report bugs for this package: http://r-forge.r-project.org/tracker/?group_id=505

genomics

Scripts, utilities and programs for genomic bioinformatics.

genvisr

Genome data visualizations

hydra

leaflet

R Interface to Leaflet Maps

leaflet-geoman

🍂🗺️ A Leaflet Plugin For Drawing and Editing Geometry Layers

minfi

Devel repository for minfi

mocode

oncoprint

Create beautilful oncoprints in R

pathview

Clone from pathview on bioconductor fixing a clash with dplyr

pirs

profile basd Illumina pair-end Reads Simulator

rpivottable

A R wrapper for the great library pivottable

scrattch.io

Functions for handling RNA-seq files and formats as input and output for scrattch functions.

shinymaterial