Comments (3)
You need to store the number of currently running jobs in each iteration, compare with the number of jobs of the previous iteration and pass the difference to pb$tick()
. This is a little cumbersome, we ideally want to use pb$update()
(which is currently broken, see r-lib/progress#24).
from batchtools.
The first test for waitForJobs
fails currently on LiDO.
from batchtools.
Should be fixed by now.
from batchtools.
Related Issues (20)
- Error in readLog() on Slurm cluster HOT 12
- scoping errors depending on objects in global environment
- Job requeue on Slurm - 'no such file or directory' & workaround HOT 1
- ability to suppress warning on failure to source `source` when calling makeRegistry
- All jobs expired with SGE cluster, job script permission denied HOT 2
- makeClusterFunctions store.job.collection flag documentation
- Yet another `BatchtoolsExpiration: Future ('<none>') expired` error
- `$conditions` blows up rds `results/*.rds` files HOT 2
- Publish 0.9.16 on CRAN HOT 3
- Edit the job template without clearing the entire registry
- Make 'options(error = function(e) traceback(2))` optional in testJob
- Error in (function () : unused argument (x = 3) HOT 3
- Question: How are template files interpretted? HOT 1
- Effectively use batchtools for Targets-based workflow in SLURM HOT 4
- squeue cmd not found when running R targets on singularity docker image HOT 1
- calling `batchMap` + `submitJob` in a loop triggers "Registry must be empty" error HOT 1
- submitJob - can't find qsub function HOT 1
- Slurm resource named `clusters` in docs, and `cluster` in `getClusters`
- Creating jobs without package dependencies installed on head node
- Old version of Slurm, "invalid job state specified: SI" HOT 1
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from batchtools.