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nanoporelib icon nanoporelib

components for hydrodynamic brownian simulation, nanopore data analysis, and necessary tools in usage

p2 icon p2

This program implements the P^2 algorithm as documented in "The P-Square Algorithm for Dynamic Calculation of Percentiles and Histograms without Storing Observations," Communications of the ACM, October 1985 by R. Jain and I. Chlamtac. Both the point method and histogram method are implemented.

pyjion icon pyjion

Pyjion - A JIT for Python based upon CoreCLR

pynp icon pynp

nanopore data analysis tools

rhdf5 icon rhdf5

Access HDF5 files from R. Based on a package originally authored by Roy Kuraisa, Wilson Lau and Jason Eglin at Merck & Co. that was donated to Sage Bionetworks.

segment-anything icon segment-anything

The repository provides code for running inference with the SegmentAnything Model (SAM), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.

uammd icon uammd

A CUDA project for Molecular Dynamics, Brownian Dynamics, Hydrodynamics... intended to simulate a very generic system constructing a simulation with modules.

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