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Marc's Projects

aldex2 icon aldex2

ALDEx tool to examine compositional high-throughput sequence data with Welch's t-test

chatterbot icon chatterbot

ChatterBot is a machine learning, conversational dialog engine for creating chat bots

dockerfile icon dockerfile

Collection of Bioinformatics related Dockerfiles

genetic-algorithms icon genetic-algorithms

Showcasing the concept of Genetic Algorithms with the example of the Travelling Salesman Problem (in CoffeeScript)

personal_website_ruby icon personal_website_ruby

A website built with Ruby on Rails, HTML5, CSS with Saas to display samples of my past analyses.

predictionet icon predictionet

This package contains a set of functions related to network inference combining genomic data and prior information extracted from biomedical literature and structured biological databases.The main function is able to generate networks using bayesian or regression-based inference methods; while the former is limited to < 100 of variables, the latter may infer network with hundreds of variables. Several statistics at the edge and node levels have been implemented (edge stability, predictive ability of each node, ...) in order to help the user to focus on high quality subnetworks. Ultimately, this package is used in the 'Predictive Networks' web application developed by the Dana-Farber Cancer Institute in collaboration with Entagen

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