Comments (3)
Hi Max, I tried setting a different file as the first sample to see if it was an RT benchmark issue. I have the same problem... greetings from Ithaca.
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Hi @bwf7 , does this happen with other datasets as well or just this one? Can you post the contents of the entire status.csv file, or send it to me by email? You know how to reach me ;)
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Hi Max, new data (and job), same issue. Thanks much for your help. Here's the status of the new job:
Time | Status | Details | elapsed_time | |
---|---|---|---|---|
1 | 20190704_134222 | Finished | all analyses done, total time | 0 |
2 | 20190704_134215 | Saving table peaktable_grouped_Rtcorr_unprocessed.csv | Writing file | 6.82 |
3 | 20190704_134106 | Saving table peaktable_grouped_Rtcorr.csv | Getting Mseek intensities | 69.19 |
4 | 20190704_134055 | Saving table peaktable_grouped_Rtcorr.csv | Extracting peaktable | 11.06 |
5 | 20190704_130235 | Regroup peaks | group.density | 2300 |
6 | 20190704_130235 | Exporting data | Retention time correction information | 0.02 |
7 | 20190704_130157 | Retention time correction | obiwarp | 37.89 |
8 | 20190704_130151 | Saving table peaktable_grouped_unprocessed.csv | Writing file | 6.53 |
9 | 20190704_130048 | Saving table peaktable_grouped.csv | Getting Mseek intensities | 62.75 |
10 | 20190704_130036 | Saving table peaktable_grouped.csv | Extracting peaktable | 11.91 |
11 | 20190704_122529 | Group peaks | group.density | 2107.17 |
12 | 20190704_122522 | Exporting data | peaktable_all.csv | 6.92 |
13 | 20190704_121116 | Finding peaks | XcmsSet peak detection | 845.53 |
14 | 20190704_121057 | Starting analysis | loading files | 19.1 |
15 | 20190704_121057 | Starting analysis with xcms_runner in METABOseek v0.9.3 and xcms version 3.2.0 | initializing parameters | 0.08 |
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Related Issues (20)
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