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bwf7 avatar bwf7 commented on September 4, 2024

Hi Max, I tried setting a different file as the first sample to see if it was an RT benchmark issue. I have the same problem... greetings from Ithaca.

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mjhelf avatar mjhelf commented on September 4, 2024

Hi @bwf7 , does this happen with other datasets as well or just this one? Can you post the contents of the entire status.csv file, or send it to me by email? You know how to reach me ;)

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bwf7 avatar bwf7 commented on September 4, 2024

Hi Max, new data (and job), same issue. Thanks much for your help. Here's the status of the new job:

  Time Status Details elapsed_time
1 20190704_134222 Finished all analyses done, total time 0
2 20190704_134215 Saving table peaktable_grouped_Rtcorr_unprocessed.csv Writing file 6.82
3 20190704_134106 Saving table peaktable_grouped_Rtcorr.csv Getting Mseek intensities 69.19
4 20190704_134055 Saving table peaktable_grouped_Rtcorr.csv Extracting peaktable 11.06
5 20190704_130235 Regroup peaks group.density 2300
6 20190704_130235 Exporting data Retention time correction information 0.02
7 20190704_130157 Retention time correction obiwarp 37.89
8 20190704_130151 Saving table peaktable_grouped_unprocessed.csv Writing file 6.53
9 20190704_130048 Saving table peaktable_grouped.csv Getting Mseek intensities 62.75
10 20190704_130036 Saving table peaktable_grouped.csv Extracting peaktable 11.91
11 20190704_122529 Group peaks group.density 2107.17
12 20190704_122522 Exporting data peaktable_all.csv 6.92
13 20190704_121116 Finding peaks XcmsSet peak detection 845.53
14 20190704_121057 Starting analysis loading files 19.1
15 20190704_121057 Starting analysis with xcms_runner in METABOseek v0.9.3 and xcms version 3.2.0 initializing parameters 0.08

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