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misazaa's Projects

dada2 icon dada2

Accurate sample inference from amplicon data with single nucleotide resolution

dotfiles icon dotfiles

:wrench: .files, including ~/.macos โ€” sensible hacker defaults for macOS

gmpr icon gmpr

Calculate the normalizing factors for zeroinflated sequencing data such as microbiome sequencing data

inf-biox121 icon inf-biox121

Course material for 2017 edition of the INF-BIOx121 course "High Throughput Sequencing technologies and bioinformatics analysis" at the University of Oslo

kraken-biom icon kraken-biom

Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).

kraken_greengenes icon kraken_greengenes

Conversion of the Greengenes taxonomy and fasta file to formats accepted by Kraken

microbiome_helper icon microbiome_helper

An assortment of scripts to help process and automate various microbiome and metagenomic bioinformatic tools.

picrust icon picrust

Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tests

picrust2 icon picrust2

Code, unit tests, and tutorials for running PICRUSt2

shovill icon shovill

Faster SPAdes assembly of Illumina reads

stamp icon stamp

Statistical Analysis of Metagenomic Profiles

teaching icon teaching

Code and files used in teaching and training courses.

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