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Medical Image Registration ToolKit

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The Medical Image Registration ToolKit (MIRTK) is a research-focused image processing toolkit, developed at the BioMedIA research group. It provides a collection of libraries and command-line tools to assist in processing and analyzing imaging data.

See the online documentation for more information.

Installation

See the installation instructions for a step-by-step guide on how to install the MIRTK.

License

The MIRTK is distributed under the terms of the Apache License Version 2. See the accompanying license file for details. The license enables usage of MIRTK in both commercial and non-commercial applications, without restrictions on the licensing applied to the combined work.

This directory includes source files and references to Git submodule repositories grouped and distributed under the GitHub MIRTK Organization, whose source files are covered by their own respective license terms. These licenses are compatible with the MIRTK license. See the download page for details.

Citation and acknowledgements

In the event you found the MIRTK useful, please consider giving appropriate credit to the software.

See the publications list for suitable citations.

MIRTK's Projects

batch icon batch

Pairwise Brain Atlas Construction (BAtCh) HTCondor/SLURM workflow

boost icon boost

Boost header files required by Medical Image Registration ToolKit (MIRTK).

deformable icon deformable

Deformable shape module with focus on neonatal cortex reconstruction.

drawem icon drawem

Developing brain Region Annotation With Expectation-Maximization

eigen icon eigen

Eigen header files required by Medical Image Registration ToolKit (MIRTK).

gifti icon gifti

GIFTI C library from https://www.nitrc.org/projects/gifti/

lbfgs icon lbfgs

libLBFGS: a library of Limited-memory Broyden-Fletcher-Goldfarb-Shanno (L-BFGS)

malpem icon malpem

Work in progress, use original package of Christian Ledig in the meantime.

mapping icon mapping

Brain mapping module of the Medical Image Registration ToolKit (MIRTK).

metaio icon metaio

MetaImage is the text-based tagged file format for medical images that resulted. We have now extended that file format to support a variety of objects that occur in medicine such a tubes (for vessels, needles, etc.), blobs (for arbitrary shaped objects), cubes, spheres, etc. The complete library is known at MetaIO.

nifti icon nifti

NIfTI C library from http://nifti.nimh.nih.gov/pub/dist/src/

repeat icon repeat

REgistration PErformance Assessment Tools

scripting icon scripting

Scripting utilities of the Medical Image Registration ToolKit (MIRTK).

viewer icon viewer

The companion viewer for MIRTK, known as rview as part of IRTK.

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