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16s-rdna-v3-v4

16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo/

ancient-microbiome-denovo

breast-cancer-prediction-project

Different approaches as (ANN,RandomForest,Bayes and KNeighbors) to solve and predict with the best accuracy malignous cancers

code-for-benjamino_lincoln-ms

Code for Manuscript: Benjamino, Lincoln, Srivastava, & Graf

communitydynamicsmodel

comw

Comparative Metatranscriptomics Workflow

crc_meta

Code and analysis results for the CRC shotgun meta-analysis

dada2-rrndb

Function to match rrnDB 16S copy number information to DADA2 taxonomy output.

doing-meta-analysis-in-r

All R code and source files for the online guide "Doing Meta-Analysis with R: A Hands-On Guide"

ecolac-r-workshop

Learn how to work in R and automatise extracting data from your raw instrument files.

epicon.mycobiome

fargene

fr

gapit3

Genome Association Predict Integrate Tools

genomica_computacional

Curso de Genómica Computacional impartido en la Facultad de Ciencias, UNAM.

ggcor-1

ggcor备用源，版权归houyunhuang所有，本源仅供应急使用

gtdbtk

A toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

kieft_and_zhou_et_al._2020

marmic_2017

Course materials for NGS genomic & metagenomic course (Feb 2017)

medns

Scripts accompanying Chafee et al., ISME 2017

microbial-inoculants_meta-analysis

This repository includes the data and code

microbiome

Microbiome research

microeco

An R package for data analysis in microbial community ecology

mypeng

nufeb

Official release of the NUFEB software

otu-table-to-bubble-plot

R script to create from OTU/ASV tables nice bubble plots for your scientific publications

pigc

The construction of reference gene catalog and metagenome-assembled genomes of pig gut microbiome.

popgen-stats

Scripts to calculate population genetics statistics

r-mucilage-isolates-dbcan2

R Analysis of data output from scanning mucilage isolate genomes using dbCAN2

ratio

This repository contains the supplementary files of a recent manuscript.