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albumentations

fast image augmentation library and easy to use wrapper around other libraries

atlas

a texture atlas generator for the texture mapping project

chronicle

An ordered record of events and data

commongl

Experiments in GLSL shading for Slicer and other environments

ctk

A set of common support code for medical imaging, surgical navigation, and related purposes.

deep_learning_inference_browser

Shows an example how to train a keras model for brain lesion segmentation and how to use keras.js to run the inference path in the browser

extensionsindex

Slicer extensions index

facetedvisualizer

Extension for Slicer4 that provides a faceted search facility based on an anatomical ontology to control the visibility of an anatomical atlas.

itk

Insight Toolkit

itk-retroactive-review

Hosting code reviews for ITK

jqplotdownloads

landmarkregistration

An interactive registration tool that manages viewing and manipulating of sets of fiducials

multivolumeexplorer

Slicer4 module and infrastructure to support exploration of multi-dimensional volumes that can be represented as vector images.

multivolumeimporter

A module for creating VectorImageContainer MRML nodes, used in particular by VectorImageExplorer

pkmodeling

Slicer Extension providing pharmacokinetic modeling

pyrender

Easy-to-use glTF 2.0-compliant OpenGL renderer for visualization of 3D scenes.

quantitativediffusion

A 3D Slicer version 4 extension for clustering fiber tracts and calculating quantitative statistical measures.

rt106

Rt 106 is a scalable, containerized analytics and application framework for creating interactive web applications around long running (batch style) analytics.

rt106-algorithm-sdk

Rt 106 SDK for integrating algorithms.

rt106-datastore

REST API for a rt106-datastore. This repo serves as a base image for concrete implementations of a datastore, e.g. rt106-datastore-local.

rt106-datastore-local

Concrete implementation of a Rt 106 datastore that uses a directory structure on the filesystem to manage data. Data is served over a REST API implemented in rt106-datastore.

rt106-frontend

Rt 106 application framework and server.

rt106-mysql

MySQL configured for Rt 106.

rt106-path-seed

Rt 106 seed application for pathology.

rt106-rabbitmq

RabbitMQ configured for Rt 106.

rt106-rad-seed

Rt 106 seed application for radiology.

rt106-simple-region-growing

A region growing image segmentation algorithm based on the itkConfidenceConnectedImageFilter packaged for Rt 106.

rt106-wavelet-nuclei-segmentation

A cell nuclei segmentation based on ITK packaged for Rt 106.

rt106.github.io

Documentation for Rt 106 - A scalable, containerized analytic and application framework for creating interactive web applications around long running (batch style) analytics.

sites

a place for some demo code to be exposed as ghpages