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annotator

A Synapse annotations automation tool.

biolinkml

Biolink modeling language

biothings_schema.py

Python Package to view and analyze schemas defined in schema.org way

biothings_schema_discover_app

dccvalidator

Validate data, metadata, and annotations

discover_app_hack

discovery-app

The Data Discovery Engine project by the CD2H Data working-group

htan-data-ingress-docs

A draft of the HTAN dataset ingress workflow - to share with tester teams and early adopters.

htan-data-pipeline1

htan-portal

The HTAN Data Portal

htan_data_curator

Data Ingest Shiny App

json-schema-test

minidream-challenge

minidream-r-env

Resources for setting up and managing an RStudio environment for interactive mini-DREAM activities

nf-drugx

nlp-deid-service-schemas

The NLP de-id API is a standard way to de-identify clinical notes

pson-cell-line-misc

Ad hoc data processing scripts for various PSON cell line studies - no documentation, no comments, quick and dirty

purl.obolibrary.org

A new system for managing OBO PURLs

sage-meta

sandbox-infra

Automation for the Sage AWS org-sagebase-sandbox account

sandbox-provisioner

An service to auto provision resources on AWS scicomp

schemas

Hosting CD2H data schemas in schema.org standard

schematic

schematic-test

scicomp-provisioner

An service to auto provision resources on AWS scicomp

synapse-formation-templates

json/yaml templates of Synapse "projects"

synapseannotations

Sage Bionetworks derived standards for annotating content in Synapse.

synapseformation

Client for using Synapse Formation templates.

synapsepythonclient

Programmatic interface to Synapse services for Python

syndccutils

code for managing data coordinating operations through Synapse