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canvas2pdf

Export your HTML canvas to PDF

cy-jdeps

Scripts for analyzing dependencies in the Cytoscape App Store

cy3-bounded-number-tester

Just a very simple app to visually test Cytoscape's Bounded Number tunables.

cyjs-simple-cluster

Testing a clustering algorithm extension for Cytoscape.js

cyjs-webgl

Testing webgl with cytoscape.js

cytoscape-app-samples

Cytoscape 3 sample code for App developers.

cytoscape-kar-sample

A Cytoscape App implemented as a KAR file (Karaf Archive) that contains multiple OSGi bundles.

cytoscape-perf

Cytoscape performance benchmarks and scripts

cytoscape.js-layers

Cytoscape.js plugin for simplified layers (svg, canvas, html)

cytoscapeapptest

Bundle Apps for testing Cytoscape APIs.

genemania

GeneMANIA helps you predict the function of your favourite genes and gene sets.

gsea-desktop

Gene Set Enrichment Analysis (GSEA) is a computational method that determines whether an a priori defined set of genes shows statistically significant, concordant differences between two biological states (e.g. phenotypes).

maplemix

MapleMIX is an online partial evaluator for the programming language Maple.

mastermap_example

jupyter notebook with example on how to create a mastermap

netmatchstar

An enhanced Cytoscape network querying app.

partialeval-scala

Scala implementation of partial evaluators from the book "Partial Evaluation and Automatic Program Generation"

scala-ide

Scala IDE for Eclipse

scala.cyapp

Template Scala Cytoscape App.

tableviewtest

wordcloudapp

Deprecated: see WordCoundPlugin repository