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accelerators

R based data science solution accelerator suite that provides templates for prototyping, reporting, and presenting data science analytics of specific domains

aclust

A-Clustering functions and analysis pipeline for methylation outcome data

atac-seq-pipeline

ENCODE ATAC-seq pipeline

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

ballgown

Bioconductor package "ballgown", devel version. Isoform-level differential expression analysis in R.

biopython

Official git repository for Biopython (converted from CVS)

biopython-cn

Biopython Tutorial Chinese Translation

canvasxpress

JavaScript VisualizationTools

chip-seq-pipeline2

ENCODE ChIP-seq pipeline

deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

encoded

Metadata database for ENCODE project

nsfc_conclusion_downloader

A tool to Download PDF format conclusion from http://output.nsfc.gov.cn/

predictive-practice-with-r

《R语言预测实战》书籍数据及代码

r-tutor

R语言学习资料

rna-seq-pipeline

spermatogenesis2018

Code for Christina and Nils' project to dissect spermatogenesis in mice

tbtools

GUI/CommandLine Tool Box for biologistists to utilize NGS data.

wgcna

:exclamation: This is a read-only mirror of the CRAN R package repository. WGCNA — Weighted Correlation Network Analysis. Homepage: http://www.genetics.ucla.edu/labs/horvath/CoexpressionNetwork/Rpackages/WGCNA/

wisecondorx

WisecondorX — An evolved WISECONDOR

workshop-scrnaseq

Single cell RNA sequencing analysis course