Comments (4)
Also, this failure shows a different error: https://github.com/microCOVID/microCOVID/actions/runs/3713766288/jobs/6296813290
Run yarn prevalence -b -c -k *** -v /home/runner/.virtualenvs/.venv
yarn run v1.22.19
$ ./scripts/prevalence_helper.sh -b -c -k *** -v /home/runner/.virtualenvs/.venv
Using a manual virtualenv directory: /home/runner/.virtualenvs/.venv
Branch will be based on the currently checked out branch
Switched to a new branch 'auto-update-prevalence-2022-12-16--14-05-42'
remote:
remote: Create a pull request for 'auto-update-prevalence-2022-12-16--14-05-42' on GitHub by visiting:
remote: https://github.com/microCOVID/microCOVID/pull/new/auto-update-prevalence-2022-12-16--14-05-42
remote:
To https://github.com/microCOVID/microCOVID
* [new branch] auto-update-prevalence-2022-12-16--14-05-42 -> auto-update-prevalence-2022-12-16--14-05-42
branch 'auto-update-prevalence-2022-12-16--14-05-42' set up to track 'origin/auto-update-prevalence-2022-12-16--14-05-42'.
Created branch auto-update-prevalence-2022-12-16--14-05-42
Activating the virtualenv
Activating virtulenv: /home/runner/.virtualenvs/.venv/bin/activate
Running prevalence script
Fetching https://raw.githubusercontent.com/CSSEGISandData/COVID-19/master/csse_covid_19_data/UID_ISO_FIPS_LookUp_Table.csv...
read 4322 objects
Fetching https://raw.githubusercontent.com/CSSEGISandData/COVID-19/master/csse_covid_19_data/csse_covid_19_daily_reports/12-15-2022.csv...
read 401[7](https://github.com/microCOVID/microCOVID/actions/runs/3713766288/jobs/6296813290#step:10:8) objects
Fetching https://raw.githubusercontent.com/CSSEGISandData/COVID-19/master/csse_covid_19_data/csse_covid_19_daily_reports/12-14-2022.csv...
read 4017 objects
Fetching https://raw.githubusercontent.com/CSSEGISandData/COVID-19/master/csse_covid_19_data/csse_covid_19_daily_reports/12-13-2022.csv...
read 4017 objects
Fetching https://raw.githubusercontent.com/CSSEGISandData/COVID-19/master/csse_covid_19_data/csse_covid_19_daily_reports/12-12-2022.csv...
read 4017 objects
Fetching https://raw.githubusercontent.com/CSSEGISandData/COVID-19/master/csse_covid_19_data/csse_covid_19_daily_reports/12-11-2022.csv...
read 4017 objects
Fetching https://raw.githubusercontent.com/CSSEGISandData/COVID-19/master/csse_covid_19_data/csse_covid_19_daily_reports/12-10-2022.csv...
read 4017 objects
Fetching https://raw.githubusercontent.com/CSSEGISandData/COVID-19/master/csse_covid_19_data/csse_covid_19_daily_reports/12-09-2022.csv...
read 4017 objects
Fetching https://raw.githubusercontent.com/CSSEGISandData/COVID-19/master/csse_covid_19_data/csse_covid_19_daily_reports/12-0[8](https://github.com/microCOVID/microCOVID/actions/runs/3713766288/jobs/6296813290#step:10:9)-2022.csv...
read 4017 objects
Fetching https://raw.githubusercontent.com/CSSEGISandData/COVID-1[9](https://github.com/microCOVID/microCOVID/actions/runs/3713766288/jobs/6296813290#step:10:10)/master/csse_covid_19_data/csse_covid_19_daily_reports/12-07-2022.csv...
read 4017 objects
Fetching https://raw.githubusercontent.com/CSSEGISandData/COVID-19/master/csse_covid_19_data/csse_covid_19_daily_reports/12-06-2022.csv...
read 4017 objects
Fetching https://raw.githubusercontent.com/CSSEGISandData/COVID-19/master/csse_covid_19_data/csse_covid_19_daily_reports/12-05-2022.csv...
read 4017 objects
Fetching https://raw.githubusercontent.com/CSSEGISandData/COVID-19/master/csse_covid_19_data/csse_covid_19_daily_reports/12-04-2022.csv...
read 4017 objects
Fetching https://raw.githubusercontent.com/CSSEGISandData/COVID-19/master/csse_covid_19_data/csse_covid_19_daily_reports/12-03-2022.csv...
read 4017 objects
Fetching https://raw.githubusercontent.com/CSSEGISandData/COVID-19/master/csse_covid_19_data/csse_covid_19_daily_reports/12-02-2022.csv...
read 4017 objects
Fetching https://raw.githubusercontent.com/CSSEGISandData/COVID-19/master/csse_covid_19_data/csse_covid_19_daily_reports/12-01-2022.csv...
read 4017 objects
Fetching https://raw.githubusercontent.com/CSSEGISandData/COVID-19/master/csse_covid_19_data/csse_covid_19_daily_reports/11-30-2022.csv...
read 4017 objects
Fetching https://raw.githubusercontent.com/CSSEGISandData/COVID-19/master/csse_covid_19_data/csse_covid_19_daily_reports/11-29-2022.csv...
read 4017 objects
Fetching https://raw.githubusercontent.com/govex/COVID-19/master/data_tables/vaccine_data/global_data/time_series_covid19_vaccine_global.csv...
read 127688 objects
Traceback (most recent call last):
File "/home/runner/work/microCOVID/microCOVID/update_prevalence.py", line 1929, in <module>
main()
File "/home/runner/work/microCOVID/microCOVID/update_prevalence.py", line 18[10](https://github.com/microCOVID/microCOVID/actions/runs/3713766288/jobs/6296813290#step:10:11), in main
parse_jhu_vaccines_global(cache, data)
File "/home/runner/work/microCOVID/microCOVID/update_prevalence.py", line [14](https://github.com/microCOVID/microCOVID/actions/runs/3713766288/jobs/6296813290#step:10:15)94, in parse_jhu_vaccines_global
raise ValueError(f"Not able to gain data from {JHUVaccinesTimeseriesGlobal.SOURCE}")
ValueError: Not able to gain data from https://raw.githubusercontent.com/govex/COVID-[19](https://github.com/microCOVID/microCOVID/actions/runs/3713766288/jobs/6296813290#step:10:20)/master/data_tables/vaccine_data/global_data/time_series_covid19_vaccine_global.csv
Sentry is attempting to send 2 pending error messages
Waiting up to 2 seconds
Press Ctrl-C to quit
error Command failed with exit code 1.
info Visit https://yarnpkg.com/en/docs/cli/run for documentation about this command.
Error: Process completed with exit code 1.
from microcovid.
I tried running the prevalence script from a fresh install, and it succeeded! Perhaps that data source was down for a while? Can we try re-triggering the GH action?
from microcovid.
I tried running the prevalence script from a fresh install, and it succeeded! P Can we try re-triggering the GH action?
Success! Hopefully tomorrow' automated run will succeed as well.
from microcovid.
It did! #1697 (comment)
from microcovid.
Related Issues (20)
- Create fail-safe mode for calculator HOT 1
- Cross-check model against reality
- Reduce WARNING-level logs in update_prevalence.py to at most one a day
- Better UX when prevalence data is stale HOT 3
- Validation procedure for code/model changes HOT 2
- Use wastewater data? HOT 3
- Announcement: microCOVID needs your help
- Announcement: End of microCOVID Project - 2023-03-10 HOT 1
- Update UI to work without prevalence data HOT 1
- Warning appears for vacination even if 'percent of population vaccinated' is supplied HOT 2
- Invisible population box can invisibly inherit a saved value instead of 100,000 HOT 1
- Manual prevalence entry v1 proposal HOT 10
- Tests and previews unavailable for branch-based workflow HOT 1
- Change-over-past-week field: Wipe any saved values in this field and replace with zero.
- Improve indicator of accuracy HOT 3
- Manual prevalence entry v2 proposal HOT 1
- Text boxes are too small when window is ~800-1100px wide
- Update prevalence multiplier from 2x to 8x
- Manual "Weekly new cases" override (+ bonus one lower preset option)
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