Name: Mike T Connelly
Type: User
Company: National Human Genome Research Institute
Bio: National Human Genome Research Institute
Coral holobiont evolution, host-microbe interactions, immunology and stress responses
Twitter: MikeT_Connelly
Location: Bethedsa, MD
Blog: https://michaeltconnelly.github.io/
Mike T Connelly's Projects
These scripts and data are for the analysis of physiology (IPAM fluorometry and respirometry), transcriptome and microbiome data for the publication "Antibiotics reduce Pocillopora coral-associated bacteria diversity, decrease holobiont oxygen consumption, and activate immune gene expression".
Scripts for phylogenetic analysis of coral immune gene families
Scripts for analysis of EAPSI Pocillopora transcriptomes from stable reef sites Houwan and Wanglitung in antibiotics, heat stress, combined, and control treatments
Scripts and data for RNAseq analysis of EAPSI Pocillopora transcriptomes from stable reef sites Houwan and Wanglitung in LPS and control treatments
Scripts for analysis Symbiodinaceae RNAseq
This is a test repo.
Repository for exploratory analysis of NMNH IZ dept. coral collections
Links to data and analysis scripts for the poster "Towards a modern integrative taxonomy of Pocillopora corals: a literature synthesis and meta-analysis of genetic data" (#3964) at Ocean Sciences Meeting 2022.
Config files for my GitHub profile.
Personal webpage for Mike Connelly
Analysis of the bacteria microbiome on PAN-10, the Pocillopora genotype used to assemble the genome
Data and scripts for analysis of dry coral hDNA extractions and UCE sequencing
Scripts for CompBio-athon PopGen instructional sessions: SNP analyses, Population Differentiation analyses, Outlier analyses & GWAS, eQTL analyses
Scripts for analysis of Taiwan Pocillopora coral mitochondrial lineages and algal symbiont communities
Scripts and outputs from #TidyTuesday exercises