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Michael T. Connelly

Hello, and welcome! I am a Marine Evolutionary Ecologist with a strong passion for exploring the intricate connections between genetics, evolution, and the marine environment. With a solid foundation in genomics and data analysis, my work focuses on unraveling the mysteries of evolutionary processes in marine species. I am deeply interested in leveraging advanced computational tools to uncover valuable insights from genomic data, contributing to sustainable biotechnological solutions and enhancing our understanding of marine ecosystems.

Mike T Connelly's Projects

coral_antibiotics_physiology icon coral_antibiotics_physiology

These scripts and data are for the analysis of physiology (IPAM fluorometry and respirometry), transcriptome and microbiome data for the publication "Antibiotics reduce Pocillopora coral-associated bacteria diversity, decrease holobiont oxygen consumption, and activate immune gene expression".

eapsi_pocillopora_axh icon eapsi_pocillopora_axh

Scripts for analysis of EAPSI Pocillopora transcriptomes from stable reef sites Houwan and Wanglitung in antibiotics, heat stress, combined, and control treatments

eapsi_pocillopora_lps icon eapsi_pocillopora_lps

Scripts and data for RNAseq analysis of EAPSI Pocillopora transcriptomes from stable reef sites Houwan and Wanglitung in LPS and control treatments

iz-dry-corals icon iz-dry-corals

Repository for exploratory analysis of NMNH IZ dept. coral collections

metapocillopora icon metapocillopora

Links to data and analysis scripts for the poster "Towards a modern integrative taxonomy of Pocillopora corals: a literature synthesis and meta-analysis of genetic data" (#3964) at Ocean Sciences Meeting 2022.

pan-10_qiime2 icon pan-10_qiime2

Analysis of the bacteria microbiome on PAN-10, the Pocillopora genotype used to assemble the genome

popgen icon popgen

Scripts for CompBio-athon PopGen instructional sessions: SNP analyses, Population Differentiation analyses, Outlier analyses & GWAS, eQTL analyses

taiwan_p-acuta icon taiwan_p-acuta

Scripts for analysis of Taiwan Pocillopora coral mitochondrial lineages and algal symbiont communities

tidy icon tidy

Scripts and outputs from #TidyTuesday exercises

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