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cluster_manager

Manages ipython cluster

cluster_tools

Robust handling of storage system on grid with python

enhance

package manager for home directory

glnexus

Scalable gVCF merging and joint variant calling for population sequencing projects

gramps

Source code for Gramps Genealogical program

ibidas

Ibidas is an environment for data handling and exploration, able to cope with different data structures and sources

ibidas3

Conversion of Ibidas to Python 3

pacbio_pipeline

pysais

A Python C module wrapper around the SA-IS suffix array construction algorithm by Yuta Mori.

rdn

Matlab toolbox for robust difference normalization of microarrays

seqal

Sequence Alignment module for Python (based on implementation of Isaac Turner)

slurm_withinnode_scheduler

Allows scheduling of jobs that occupy partial nodes for SLURM systems that only allow full node jobs

snakemake

This is the development home of the workflow management system Snakemake. For general information, see

spiderdocs

Official repository for the SURF Spider platform user documentation