Marc Horlacher's Projects
Benchmarking DNA Language Models on Biologically Meaningful Tasks
BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluation (OASis) and an interface for computer-assisted antibody sequence design.
Jupyter notebook based genomic data visualization toolkit.
Implementations of various datastructures
A collection of dockerized software for Data Science
Gin provides a lightweight configuration framework for Python
A Tensorflow 2.x implementation of the explainable AI method 'Integrated Gradients'.
Predict the structure of immune receptor proteins
Extracts the background image from a sequence of stationary images (JPEG)
Kafka Connect JDBC Docker Image.
Generate consensus sequence motifs from (arbitrary) sequence importance scores.
Forward from mhorlacher.github.io to marchorlacher.com
Tools to connect to and interact with the Mila (and other) clusters
Various small Scripts for NGS Data Analysis
Utilities for the Python language
This is the development home of the Snakemake wrapper repository, see
A small library for streaming data to a number of connecting clients
TFDS is a collection of datasets ready to use with TensorFlow, Jax, ...