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Download pre-built packages

You can download the latest stable version from here or latest development version from here.

Notes on installation on macOS

Latest versions of MetGem are only compatible with macOS 10.15 Catalina and later. Currently, MetGem lacks a signature for macOS. As a workaround, user can allow MetGem in the macOS Gatekeeper protection by running the following command in the terminal from the Applications folder.

  • Download MetGem and click the .dmg installer - Drag and drop MetGem into the Applications folder.
  • Open a Terminal and type the following command to tell macOS to trust the installed version of MetGem:
    sudo xattr -cr /Applications/MetGem/MetGem.app
    
  • Approve command with user password.
  • Start MetGem.
  • If this fails, try the following command (the app will appear in the security preferences and you will be able to choose the "Open anyway" option):
    sudo xattr -d com.apple.quarantine /Applications/MetGem/MetGem.app
    

Installation from source

  1. Install Miniconda.

  2. Clone the repository:

git clone https://github.com/metgem/metgem.git
cd metgem
  1. Create a new virtual environment
conda env create -f environment.yml
conda env update -f environment.dev.yml
  1. Activate the virtual environment
conda activate metgem
  1. Install build dependencies:
conda install invoke
  1. Build the resource file:
invoke rc
  1. Launch MetGem
python MetGem

For later use, you just need to activate the environment before launching MetGem

metgem's Projects

forceatlas2 icon forceatlas2

Fastest Gephi's ForceAtlas2 graph layout algorithm implemented for Python and NetworkX

libmetgem icon libmetgem

A library for molecular networking based on MS/MS spectra.

metgem icon metgem

Calculation and visualization of molecular networks based on t-SNE algorithm

metgem.github.io icon metgem.github.io

:sparkles: Build a beautiful and simple website in literally minutes. Demo at http://deanattali.com/beautiful-jekyll

pyemf icon pyemf

Pure Python Enhanced Metafile Library

qtmolecularnetwork icon qtmolecularnetwork

C++ version (and Python wrapper) of widgets used for visualisation of graph in MetGem

staged-recipes icon staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

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