Comments (4)
Appears to be an issue with that version and I haven't updated yet. I'm at 2.9:
$ picard MarkDuplicates --version
2.9.0-1-gf5b9f50-SNAPSHOT
This is more of the same related to not pinning versions. The next release will be made soon and in that these issues are addressed.
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Okay, thanks. Look forward to the update.
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I have the same problem, would downgrading picard to 2.9.0 solve the problem?
from atlas.
Yes, see https://github.com/pnnl/atlas/blob/master/atlas/envs/required_packages.yaml
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Related Issues (20)
- Error in rule run_vamb HOT 2
- NaNs in samples.tsv HOT 6
- atlas metatranscriptome data - MissingOutputException in rule run_spades HOT 19
- Error in localrule parse_vamb_output: HOT 5
- atlas downdload fail HOT 6
- Setting eggNOG_use_virtual_disk to true HOT 4
- Error in rule multiqc_mapping_genome due to incontability with python 3.12 HOT 13
- Creating envs (--conda-create-envs-only) is running without error, but not creating envs HOT 1
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- Disk_mem not sufficient HOT 6
- Error in rule HOT 5
- Error in rule run_spades HOT 19
- MissingOutputException HOT 2
- Error in rule get_bins: only 1 conting found in samples
- Error during DRAM download; processing vogdb HOT 6
- plans for supporting fungi HOT 5
- What does "max" in the combined_contig_stats.tsv mean? HOT 1
- Support for highly accurate long reads? HOT 1
- Error in rule build_qc_report: ModuleNotFoundError: No module named 'numpy._version' HOT 2
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