metaddict Goto Github PK

adaptive-superpixel-for-active-learning-in-semantic-segmentation

bass

Bayesian Adaptive Superpixel Segmentation (ICCV 2019)

coda

version 1 & 2 scripts for CODA

ifseg

IFSeg: Image-free Semantic Segmentation via Vision-Language Model (CVPR 2023)

ijepa

Official codebase for I-JEPA, the Image-based Joint-Embedding Predictive Architecture. First outlined in the CVPR paper, "Self-supervised learning from images with a joint-embedding predictive architecture."

mcview

A shiny app for metacell analysis

metacell

Metacell - Single-cell mRNA Analysis

metacell.flow

Supporting inference of differentiation flow over metacell manifolds (and innovation of additional scRNA buzzwords)

metacells

Metacells - Single-cell RNA Sequencing Analysis

metacells-vignettes

Vignettes for the Python metacells package

misha

Genomic data analysis suite

misha.ext

A home for some function that extend the `misha` package.

mtecs_multiome

metacells and mcATAC

segment-anything

The repository provides code for running inference with the SegmentAnything Model (SAM), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.

shaman

The shaman package - sampling HiC contact matrices for a-parametric normalization

simple-cnn

Simple Convolutional Neural Network pipeline for the pixel-level classification of tissue images from manual annotations

zmanr

Time-resolved single-cell transcriptomics (Zman-seq)