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Hi there 👋, Medhat Mahmoud

Bioinformatic scientist

Computational biology Ph.D., Software engineer. Love programming using Java, Go, Python, and R. Thrive on challenges and live for breakthroughs (and coffee). Working on data analysis, genome assembly, and comparative analysis. Also interested in evolution and mutations and phylogenetics. Where others say “that’s impossible”, I say “when do I start?” (usually after a cup of coffee).

Skills:

  • 🔭 I’m currently working on Human genomic variations
  • 🌱 I’m currently learning Rust
  • 👯 I’m looking to collaborate on Open source Bioiformatics projects

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Medhat's Projects

clair icon clair

Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling

pileup_consensus icon pileup_consensus

Script that takes samtools pileup output and write consensus fasta file as output.

snakepipes icon snakepipes

Customizable workflows based on snakemake and python for the analysis of NGS data

sniphles icon sniphles

Sniphles is a read-based phasing approach for phased variant calling of structural variants.

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