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Name: Mehdi Merbah

Type: User

Bio: Doing some Bioinformatics. My interests include ML/DL applications in Genomics and Transcriptomics.

Twitter: mehdimerbah

Blog: mehdimerbah.github.io

Mehdi Merbah's Projects

bashworkshop

This is a repository for a BASH Scripting workshop I delivered for HacKSU.

bioinformatics

:microscope: Path to a free self-taught education in Bioinformatics!

bioinfoscripting

Scripting for Bioinformatics. Mainly and introduction to python, BASH and basic Perl.

bw_seminar

This is a repository for a seminar on Bowtie2 and its use of the Burrows-Wheeler Transform and FM-index in short-read sequence mapping.

chemotherapy-covid19-study

This is a repostiory for a study on the correlation between cytotoxic chemotheapeutic agents and the severity of SARS-CoV II in patients with Lung Cancer.

codeforces_solutions

My suggested solutions to Codeforces Problems

compdrugdiscovery

This is a repository for a Machine Learning project targeted towards Computational Drug Discovery applications.

covid19_fake_news_detection

This is a repository for a data mining project on COVID 19 fake news detection using various machine learning classification models.

dnaseqalignment

This is a small DNA Pairwise Sequence Alignment Project. It is a tool that reads two DNA sequences from a FASTA file and generates an Alignment Score Matrix

galeshapley

This is an implementation of the Gale Shapley algorithm on the Stable Matching Problem

graphalgorithms

This repository contains implementations of Graph and Networkflow algorithms.

grnmodeling

Approaches to Gene Regulatory Networks Modeling

ma_transcription_profiling

Microarray Transcription Profiling Pipeline from end-to-end. The Differential Expression Analysis was a replication of a study and had an 86% match with its results.

mehdimerbah.github.io

This is a repo for my personal website.

practical-python

Practical Python Programming (course by @dabeaz)

project-euler-problems

This repository contains my suggested solution to the Project Euler problems. I will try to optimize them as I learn new tricks.

rbowtie2

Bioconductor package: an R wrapper for Bowtie2 and AdapterRemoval

rosalind_comp.bio

My solutions to the Computational Biology problems in ROSALIND

tda-ppin

This is a repository for a study on applying Topological Data Analysis techniques, specifically Persistent Homology on Protein-Protein Interaction data to predict functional protein complexes.

training-requirements

Training requirements for joining projects

wes

Whole Exome Sequencing end-to-end pipeline. Starting from whole exome fastq files: Data QC, Adapter Trimming, Reference Genome Alignment, SAM/BAM Validation, Data Recalibration and Variant Calling.

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Mehdi Merbah's Projects

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