mcassatt Goto Github PK
Type: User
Company: UCSC
Bio: @avershinina is the only way I get through the day
Type: User
Company: UCSC
Bio: @avershinina is the only way I get through the day
Tools test whether admixture occurred and more
Alignment viewer for linux terminal
#### Written by Emily Curd ([email protected]), Jesse Gomer ([email protected]), Gaurav Kandlikar ([email protected]), Zack Gold ([email protected]), Max Ogden ([email protected]), Lenore Pipes ([email protected])and Baochen Shi ([email protected]). Assistance was provided by Rachel Meyer ([email protected]).
SNP calling and genotyping for damaged DNA
Accurate Species TRee ALgorithm
Genome annotation with AUGUSTUS
This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib
general purpose library for evaluating the likelihood of sequence evolution on trees
Official code repository for GATK versions 4 and up
GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more
Convert, explore, and manipulate GFF and GTF files (used in bioinformatics) using a sqlite-based approach
Snakemake pipeline for variant calling from raw sequences
Consensus calling (or "reference assisted assembly"), chiefly of ancient mitochondria
A versatile pairwise aligner for genomic and spliced nucleotide sequences
Java program to transfer DNA annotations from a GenBank file to a FASTA sequence, intended for closely related mitochondrial genomes.
Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework
History of ice sheets and ice caps from the Last Glacial Maximum to present in North America, as produced by Dyke et al. (2003) and Dyke (2004)
Source code from Zhang et al., (2014) Genomic data of avian phylogenomics project. GigaScience 3:26
PartitionFinder discovers optimal partitioning schemes for DNA sequences.
Population genetics notes
Tutorial on using popular tools for learning about population history
Scripts of population genomics analysis
CLI tool for simple calculations of rates and tree heights and lengths under Yule processes.
RAxML Next Generation: faster, easier-to-use and more flexible
This repository includes the pipeline and commands which will useful for the paleogenome analysis
Tool for stripping adaptors and/or merging paired reads with overlap into single reads.
SNV impact predictor
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.