maxim-h Goto Github PK

archr

ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)

aur

Custom PKGBUILD's for various Arch packages

based.cooking

A simple culinary website.

bioinfcont19

bioseq

bonemarrowmap

A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic stem and progenitor cells and differentiated populations

chempred

Character-level RNN for tagging chemical entities in unparsed text.

dropestr

Preprocessing of Droplet-based Single-Cell RNA-seq Data

dwm

Luke's build of dwm

dwmblocks

My status bar: my build of the modular dwmblocks

erbb

exercism_solutions

my exercism stuff

fragments_to_sam

Small converter between bgzf fragment file and SAM stdout

init.lua

misc

Miscellaneous bioinformatics and general unix tools

muon

muon is a multimodal omics Python framework

prop_violin

pysam

Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.

python-intermediate-development

Intermediate Research Software Development Skills In Python Lesson Material

rust-o-rithms

scriabin

Analysis of cell-cell communication at single-cell resolution

seurat

R toolkit for single cell genomics

seurat-object

shinycell

Shiny Interactive Web Apps for Single-Cell Data

signac

R toolkit for the analysis of single-cell chromatin data

smr

SAM mapped reads

snakemake

This is the development home of the workflow management system Snakemake. For general information, see

snakemake-wrappers

This is the development home of the Snakemake wrapper repository, see

souporcell

Clustering scRNAseq by genotypes

soupx

R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data