mattloose Goto Github PK

512array_nanolights

Development code for a light interface to the ONT minION device

aln2type

ampbalancep

AmpBalance Parallel

audfprint

Landmark-based audio fingerprinting

c_fast5

C code to extract data from fast5 files

crisp_colours

Also known as chips in strange countries. A global standard for crisp/chip packaging colours.

cv

My YAML cv and resume.

duplex-tools

Splitting of sequence reads by internal adapter sequence search

fieldbioinformatics

The ARTIC field bioinformatics pipeline

flowcellvis

Animated GIF of flow cell performance from sequencing summary file.

gspring

Automatically exported from code.google.com/p/gspring

haloferax_2022

Resources For Haloferax

hv_rapidcns2

Run the epi2me-labs wf-human-variation and pipe into rapidCNS2

iterassemble

An iterative assembler for exploiting transcripts and whole genome reads from hard to assemble genomes.

longreadclub.github.io

malaysia2024

ResourcesForIC

mattloose.github.io

✨ Build a beautiful and simple website in literally minutes. Demo at https://beautifuljekyll.com

methylartist

Tools for plotting methylation data in various ways

minfq_bam

minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences

minoview

MinoView - monitoring minKNOW

minupgui

Development for a GUI

mockcommunity

Long-read mock community experiments

mpxv

Monkeypox virus primer schemes

multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

na12878

Data and analysis for NA12878 genome on nanopore

nanopore-basecalling-scripts

Some simple scripts to ease management and local basecalling of millions of FAST5 files

nanosam

nanopore to bam messing around

nefario

Tools in development for the minoTour package.

pangpt

A Generative Pre-Trained Transformer Package for Pangenomes