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brainhack-local-template_2

codegenerators

codegym

covid19ita-dash

Dashboard for monitoring COVID-19 spread in Italy using Python and Dash.

dissecting-conduction-delays

Code from: Dissecting whole-brain conduction delays through MRI microstructural measures

essnet

Improved Stability of Whole Brain Surface Parcellation with Multi-Atlas Segmentation

giraffetools

a Graphical Interface for Reproducible Analysis oF workFlow Experiments

hugo-theme-m10c

A minimalistic (m10c) blog theme for Hugo

matteomancini.github.io

My blog, NeuroSnippets!

microsuite

A collection of Dockerfiles to run several microstructural MRI tools.

mrtrix3

MRtrix provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), probabilistic tractography, track-density imaging, and apparent fibre density

myelin-meta-analysis

Code for the Elife paper "An interactive meta-analysis of MRI biomarkers of myelin".

mygiraffe

networkmodel_toolbox

Code to run dynamical simulations on a Kuramoto Network Model of Coupled Phase Oscillators with Time Delays and visualize the results.

neurosnippets

Repository for NeuroSnippets Code.

neurosnippets-hugo-blog

Repository for Neurosnippets Hugo Blog

nipype

Workflows and interfaces for neuroimaging packages

ossig

Website for the OHBM Open Science Special Interest Group

pytorch-cyclegan-and-pix2pix

Image-to-image translation in PyTorch (e.g., horse2zebra, edges2cats, and more)

qmenta-sdk-example-irontract-challenge

An example of a QMENTA-compatible tool with all the required files to build and test it.

qmrlab

Quantitative Magnetic Resonance Imaging Made Easy with qMRLab: a Software for Data Simulation, Analysis and Visualization

saltandpepper

A general structure for deep learning on signals/spectra with PyTorch

sandi-matlab-toolbox-latest-release

The latest release of the SANDI Matlab Toolbox

sirenmri

Official implementation of "Lossy compression of multidimensional medical images using sinusoidal activation networks: an evaluation study"

sparkle

Sparkle Online Event Platform

spm12

Public Releases of SPM12 - see https://github.com/spm/spm for the Development Version

trampolino

TRAMPOLINO (TRActography Meta-Pipeline cOmmand LINe tOol) is a CLI for brain tractography. It leverages Nipype to offer an immediate way to reconstruct an orientation distribution function, use it to track the streamlines and eventually filter them, all using existing software toolboxes.