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This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappear at any time.
The genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long erroneous 3GS sequencing reads and short accurate NGS sequencing reads.
GridLMM package
software tools for haplotype assembly from sequence data
Supplementary data and scripts used in the article "Haplotype-based genome wide association study using a novel SNP-set method : RAINBOW"
Graph-based alignment (Hierarchical Graph FM index)
A collection of demonstration materials for MorphoLibJ.
MindTheGap performs detection and assembly of DNA insertion variants in NGS read datasets with respect to a reference genome.
Modular Multi-scale Integrated Genome Graph Browser
Collection of mathematical morphology methods and plugins for ImageJ
A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg
Visualize multiple sequence alignment as variation graph on Sequence Tube Map
ImageJ's plugin for directional analysis in images: color-coded analysis, distribution of orientation, vector field, keypoint detection
displays multiple genomic sequences in the form of a tube map
a simulator of long read sequencing in pacbio and oxford nanopore
Annotation of Genetic Variants
tools for working with genome variation graphs
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.