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Iain Mathieson's Projects

archaic23 icon archaic23

Estimate archaic ancestry from 23andMe data

europe_selection icon europe_selection

Analysis scripts from the paper "Eight thousand years of natural selection in Europe".

f2 icon f2

Scripts for estimating the age of f2 variants from the paper "Demography and the age of rare variants"

gdc icon gdc

Short scripts for converting genetic data between formats.

gdc3 icon gdc3

Short scripts for converting genetic data between formats (python3)

ggs icon ggs

Grid Genotype Simulator

lace icon lace

Local ancestry from pseudo-haploid data

msmc icon msmc

Implementation of the multiple sequential markovian coalescent

pace icon pace

Nearest neighbour based phasing algorithm

phibd icon phibd

IBD estimation from pseudo-haploid data

rare_var_assoc icon rare_var_assoc

Analysis scripts from the paper "Differential confounding of rare and common variants in spatially structured populations"

slattice icon slattice

HMM-based estimator for selection coefficients in both single and lattice populations from the paper "Estimating selection coefficients in spatially structured populations"

spectrum icon spectrum

Scripts for analysing mutational spectrum

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