Comments (3)
hechth
commented on June 1, 2024
2
Hi - we are aware of this problem and this should be solved in version 0.21.1
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hechth
commented on June 1, 2024
@chanana did this fix your issue? If so, this can be closed.
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chanana
commented on June 1, 2024
Yes! thank you! I have a new error instead.
I again made a fresh environment via:
mkdir matchms-test
poetry init # set python 3.9 as default
poetry add matchms>>> from matchms import Spectrum
Configuration file exists at /Users/shaurya/Library/Preferences/pypoetry, reusing this directory.
Consider moving TOML configuration files to /Users/shaurya/Library/Application Support/pypoetry, as support for the legacy directory will be removed in an upcoming release.
Python 3.9.16 (main, Apr 24 2023, 11:18:10)
[Clang 14.0.3 (clang-1403.0.22.14.1)] on darwin
Type "help", "copyright", "credits" or "license" for more information.
>>> from matchms import Spectrum
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/Users/shaurya/code/matchms-test/.venv/lib/python3.9/site-packages/matchms/__init__.py", line 8, in <module>
from .Pipeline import Pipeline
File "/Users/shaurya/code/matchms-test/.venv/lib/python3.9/site-packages/matchms/Pipeline.py", line 5, in <module>
import yaml
ModuleNotFoundError: No module named 'yaml'
>>>doing a poetry add pyyaml fixes it. Perhaps we could add pyyaml as a core dependency.
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Related Issues (20)
- KeyError: 'num peaks'
- Reconsider repairing precursor mz HOT 2
- Split repair_adduct_and_parent_mass_based_on_smiles HOT 1
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- File export crashed for non utf-8 characters HOT 2
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