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absolve

Absolve antibody variable domain sequence analysis

anarci

Antibody Numbering and Antigen Receptor ClassIfication

asap

Amino-Acid Sequence Annotation Predictor (ASAP)

bcbb

Incubator for useful bioinformatics code, primarily in Python and R

big-sleep

A simple command line tool for text to image generation, using OpenAI's CLIP and a BigGAN. Technique was originally created by https://twitter.com/advadnoun

cdhit

Automatically exported from code.google.com/p/cdhit

cudf

cuDF - GPU DataFrame Library

dash_on_flask

Dash on Flask with login_required (and application factory pattern)

datasciencecoursera

jhu coursera data science repo

datasharing

The Leek group guide to data sharing

deep-tutorials-for-pytorch

In-depth tutorials for implementing deep learning models on your own with PyTorch.

dismir

dms_opt

dnachisel

:pencil2: A versatile DNA sequence optimizer

dnafeaturesviewer

:eye: Python library to plot DNA sequence features (e.g. from Genbank files)

doing_data_science

This is the example code repository for Doing Data Science by Cathy O'Neil and Rachel Schutt (O'Reilly Media)

ete

Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.

guppy_on_slurm

Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler

igblast

Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python

jetson_nanopore_sequencing

A place to collate notes and resources of our journey into porting nanopore sequencing over to accessible, portable technology.

job-description-parser

Using spaCy (an NLP library) I created a custom project for semantic analysis and custom rule-matcher for Job Descriptions/ Resumes.

logomaker

Software for the visualization of sequence-function relationships

mdb-ui-kit

Bootstrap 5 & Material Design 2.0 UI KIT

myvariantviewer

A JBrowse plugin for viewing info from mygene.info and myvariant.info

ner_youtube

pistoiahelm.github.com

Community stuff – currently including release notes, but more coming soon.

python_tutorials

This repository hosts Python code snippets and Jupyter notebooks

resumeparser

A framework to parse resumes, extract contact & other information, and check for required terms

shinybbuddy

Shiny interface to birdbuddy analytics dashboard

simple-smartsheet

Python library to interact with smartsheets