marrlab Goto Github PK

ae-cfe

ae-cfe-1

anomaly-aware-mil

A simple pooling method for multiple instance learning based on attention and anomaly scores of instances.

attmil

Attention Based Multiple Instance Learning (attMIL)

basic

A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images

batchdetect

BatchDetect: a python package for detect systematic batch effects in datasets

bright2nuc

Preprint: https://www.biorxiv.org/content/10.1101/2022.08.30.505835v1.full.pdf

car_t_targetidentification

Computational identification of targets for CAR-T cell therapy in AML

classificationall

Accurate classification of blood cells in a small acute lymphoblastic leukemia dataset using convolutional neural networks

classifier_calibration

Evaluation and improvement of the calibration of a classifier with temperature scaling.

dermai_code

Code needed to preprocess and analyse data for the dermAI project

dispr

A Diffusion Model Predicts 3D Shapes from 2D Microscopy Images

domainlab

modular domain generalization: https://pypi.org/project/domainlab/

gal1repression

Modeling Gal1 repression kinetics in single budding yeast cells

hematofateprediction

Code accompanying "Prospective identification of hematopoietic lineage choice by deep learning", Nature methods 2017, DOI:10.1038/nmeth.4182

hematopoiesismodelcomparison

comparison of different lineage hierarchy models describing hematopoiesis

hematopoieticdisorderanalysis

Data visualization, model implementation, parameter inference and model selection for mechanistic models of hematopoiesis

histonesxenopus

H4K20 methylation dynamics during Xenopus embryogenesis

initial-data-point-selection

instantdl

InstantDL: An easy and convenient deep learning pipeline for image segmentation and classification

marrlab-blog

med-al-ssl

Repository for implementation of active learning and semi-supervised learning algorithms and applying them to medical imaging datasets

milple

movementanalysis

Scripts to recreate movement analysis figures

neurogenesisanalysis

Pre-anaylsis, neurogenesis model implementation, parameter inference procedure, model averaging, model evaluation and prediction

patch-visualization

percollfft

pxpermute

recap-friday

In this repository we maintain the material for recap fridays at marr lab

redtell