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af2complex

Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.

alphamap

An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.

amberff-in-namd

amrfinderplus

AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.

are_you_still_using_elbow_method

autogluon

AutoGluon: AutoML for Text, Image, and Tabular Data

autoparams

awesome-multi-omics

List of software packages for multi-omics analysis

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

bfee2

binding free energy estimator 2

biodiscml

Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data

bioinfo-tools

Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.

casp14_high_accuracy

Code and data for high accuracy assessment in CASP14

cdhit

Automatically exported from code.google.com/p/cdhit

cialign

clustergrammer

An interactive heatmap visualization built using D3.js

clustergrammer2

"Dimensionality-increasing" data visualization tool and interactive WebGL Jupyter widget built for single-cell data.

colabfold

Making Protein folding accessible to all via Google Colab!

corals-lib-python

cytoscape-automation

Collection of scripts that include programmatic io and control of Cytoscape

daily-dose-of-data-science

A collection of code snippets from the publication Daily Dose of Data Science on Substack: https://avichawla.substack.com.

deepqm_ani_lie

diamond

Accelerated BLAST compatible local sequence aligner.

distinctipy

A lightweight package for generating visually distinct colours.

django3-omics-pipelines

dnafeaturesviewer

:eye: Python library to plot DNA sequence features (e.g. from Genbank files)

dynamicviz

enzyhtp

fatslim

Main code repository for FATSLiM

featurewiz

Use advanced feature engineering strategies and select best features from your data set with a single line of code.