mariesaitou Goto Github PK

aaags_2018

Course Materials for AAAGs 2018 Workshop

abstracts

Create the Book of Abstracts from responses in spreadsheet (.xlsx) / google forms

bio322

bio326

bio326-nmbu

BIO326 Genome sequencing; tools and analysis

bio326_shared

computationalgenomicsmanual

Robs manual for the computational genomics and bioinformatics class.

fastgxc

Computationally efficient and statistically powerful software for detecting context-specific eQTL effects in multi-context genomic studies.

gem

genespace

genotype_plot

A set of functions to visualise genotypes based on a VCF

getting-started-with-genomics-tools-and-resources

Unix, R and python tools for genomics and data science

gtexresults

Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic studies with multiple conditions."

gwidecodeml

A Python package for testing evolutionary hypotheses in genome-wide approaches.

lili-trans

Trans-PCO for detecting trans-eQTLs of cellular pathways and gene networks

metat

network_humanpop_sv

Scripts used in Saitou et al., 2021, MBE

positive-selection

Scripts and procedures for detecting positively selected genes and codons in primates

princess

regenie

regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.

selscan

Haplotype based scans for selection

speciationgenomics.github.io

Repository for speciation genomics website

statements

Successful Job Applications and Grants

supergenes_inversions

Scripts for "The emergence of supergenes from inversions in Atlantic salmon"

transpose

Transpose project

two_pop_eqtl

vcf2dis

VCF2Dis: A new simple and efficient software to calculate p-distance matrix based Variant Call Format

ws2022