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academicpages.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

affinity-schedule-openmp

Manually implementing the affinity work sharing schedule to parallelise for loops

apt-cpp

apt-cuda

apt-python4hpc

computer_vision_3d_reconstruction

Computer vision code for 3D reconstruction from point cloud data.

deep_learning_playground

diff_bum_hmm

Bayesian modelling approach for detecting RNA flexibility changes in high-throughput structure probing data under different conditions, based on an extension of the BUM-HMM method.

gh_session

gh session

git-tech-session

Lab tech session on Git, GiHub and GitHub Actions

hello-bot-bsc-paolo

high_performance_computing_playground

Exploring different HPC tools/technologies for different applications, such as computer/computational science.

kallisto

kmer_identifier

Bioinformatics Data Cleaning

machine_learning_playground

Exploring different ML algorithms for data science applications on publically available datasets.

mogonet

MOGONET (Multi-Omics Graph cOnvolutional NETworks) is a novel multi-omics data integrative analysis framework for classification tasks in biomedical applications.

my_binder

project_jovian_dl_course

ptox-repo-standards

A starter kit for setting up a new repo within the context of PrecisionTox, including a checklist of what to include in your README and templates for other recommended files

pumas_and_hares

This repository is the outcome of a group project for the Programming Skills class in the 2018 High Performance Computing Masters at Edinburgh University

python-for-probability-statistics-and-machine-learning

Jupyter Notebooks for Springer book "Python for Probability, Statistics, and Machine Learning"

r

Using R with Jupyter / RStudio on Binder

slurm_exporter

Server that collects metrics from Slurm and exposes them in the Prometheus format

software-development-assessment

Repo for Software Dev course University of Edinburgh 2018

spring-boot-template

Spring boot template including CI with Travis, Docker Hub, SonarCloud and CodeCov

unet

Application of U-net fully convolutional neural network for automated geomagnetic data analysis.

utils_ptox