Manik Garg's Projects
Advanced Python Course for PreDoc Training at the EBI
🍺 The missing package manager for macOS
R package to send function calls as jobs on LSF, SGE, Slurm, PBS, Torque, or each via SSH
R bioinformatics toolkit incubator
Statistics course for JHU Genomic Data Science Sequence
Analysis for GRAMD1B
integrated RNA-seq Analysis Pipeline
Machine Learning Course Fall 2016 (a.k.a. PCML)
Repository for the second project in Machine Learning, EPFL 2016/2017.
Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads
Python3 teaching materials for data science (2 days)
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
Practical for "Systems biology: From large datasets to biological insight 2021" course at EMBL-EBI
Supplementary figures and tables for my PhD thesis.