mangul-lab-usc Goto Github PK

annie_project

clonality and cell type composition of patients with persistent bacteremia. Extracted from bulk RNA Seq Data.

benchmarking-transcriptomics-deconvolution

Paper can be found here : https://academic.oup.com/bib/advance-article-abstract/doi/10.1093/bib/bbab265/6338547

benchmarking.error.correction.cleaned

benchmarking_error_correction

This is the GitHub repository for our benchmarking study "Benchmarking of computational error-correction methods for next-generation sequencing".

benchmarking_sv

Updated figures for "A benchmarking of WGS-based structural variant callers" paper

bioinformatics-for-ukraine

https://mangul-lab-usc.github.io/Bioinformatics-for-Ukraine/

biollmbench

biomedical_data_science

biomedical_workshop_assignment_part1_datasets

biomedical_workshop_assignment_part2_datasets

Download the data contained within the directory labeled by your email. Use this data to complete part2. There should be two files: 1) gene_matrix.csv and 2) meta_data.csv

bmdw-assignment-example

bwa_tutorial

A tutorial for generating sequence alignments using BWA

cec

Computational education consortium

clinical_metagenomics

code-availability

code-availability-temp

consistency_read_aligners

covid-19-outbreak-investigations

covid-genomics

covid_bioinformatics

Code and figures for our COVID paper

cxpt-501-fall_23

cxpt-599

Material for the course CXPT 599

cxpt599_lab_5

db.microbiome

diversity-tcr-seq

djoin

DJoin

ebcg

https://mangul-lab-usc.github.io/EBCG/

eebg2023

https://mangul-lab-usc.github.io/EEBG2023/

em-gedit

GEDIT coupled with EM algorithm

enhancing_reproducibility