Comments (1)
Traceback (most recent call last):
File "/gss1/home/wangzx02/.conda/envs/ragtag/bin/ragtag.py", line 133, in
main()
File "/gss1/home/wangzx02/.conda/envs/ragtag/bin/ragtag.py", line 89, in main
subprocess.call(subcmd)
File "/gss1/home/wangzx02/.conda/envs/ragtag/lib/python3.6/subprocess.py", line 289, in call
return p.wait(timeout=timeout)
File "/gss1/home/wangzx02/.conda/envs/ragtag/lib/python3.6/subprocess.py", line 1477, in wait
(pid, sts) = self._try_wait(0)
File "/gss1/home/wangzx02/.conda/envs/ragtag/lib/python3.6/subprocess.py", line 1424, in _try_wait
(pid, sts) = os.waitpid(self.pid, wait_flags)
from ragtag.
Related Issues (20)
- RagTAg correct: "no attribute 'get_reference_length'" HOT 1
- correct use by the species. HOT 1
- Unable to fill gap with ragtag scaffold and patch
- Stop without error message on "Reading whole genome alignments"
- updategff issues
- From delta file to agp and to fasta file of scaffolded assembly?
- `ragtag scaffold` without concatenation
- the result of ragtag.merge.fasta shows no improvement.
- Scaffolding inserts gaps that aren't covered by HiFi or ONT reads and aren't in reference HOT 7
- Can't use multiple threads via -t HOT 3
- Scaffold longer than reference genome due to NNNNs HOT 3
- pysam error
- Error when running RagTag patch command HOT 1
- patch output genome is identical to input target genome HOT 1
- ERROR: encountered an invalid zero or negative numeric AGP field. HOT 1
- Ragtag Merge IndexError for -f AGP file
- Using RagTag to close the gaps in a chromosome or reference genome using long-read data
- output file not found
- ragtag_scaffold.py: error: unrecognized arguments
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