Name: Malachi Griffith
Type: User
Company: Washington University
Bio: Associate Professor, Department of Medicine and McDonnell Genome Institute @ Washington University. Specializing in Bioinformatics, Genomics, and Cancer.
Twitter: malachigriffith
Location: St. Louis
Blog: griffithlab.org
Malachi Griffith's Projects
Python package to annotate and visualize gene fusions.
source code for ALEXA arrays project
ALEXA-seq - alternative expression analysis by RNA-seq
Early stages of converting genome/analysis-workflows from CWL to WDL
Open workflow definitions for genomic analysis from MGI at WUSM.
Archive of old code that needed tracking (for now)
Web client for CIViC: Clinical Interpretations of Variants in Cancer
Source code for the civicdb.org docs
Backend Server for CIViC Project
misc scripts for working with cwl/toil jobs
Dockerfile to use DEXSeq in the cluster
Rails frontend to The Genome Institute's drug gene interaction database.
Griffith lab research website
Running the WASHU Immunogenomics Workflow on Google Cloud - RCRF version
malachigriffith.org
OTTR: Open-source Tools for Training Resources. This is template repository for creating online courses to be published on multiple platforms. See here: https://jhudatascience.org/OTTR_Template/ for a rendered version.
Getting started with pVACtools - pVACseq, pVACbind and pVACview
Dockerfile with Python to make the pre processing steps for DexSeq
Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.