mahesh-panchal Goto Github PK

academic-project-template

A template for reproducible academic projects

ameta

Ancient microbiome snakemake workflow

aneca

ANeCA: Automated Nested Clade Analysis

assembly-project-template

This is a template for all assembly projects. Please read the instructions below on how to use it.

binzerpanchalweddingcelebration2017

The personal wedding website of the Binzer-Panchal celebration in 2017

bioconda-recipes

Conda recipes for the bioconda channel.

carpentries-workflows-nextflow

Workflow management with Nextflow and nf-core

configs

Config files used to define parameters specific to compute environments at different Institutions

earth-biogenome-project-pilot

Assembly and Annotation workflows for analysing data in the Earth Biogenome Project pilot project.

genomeassembler

gff3-validator

A GFF3 validator

github-sandbox

A place to play around testing things with Git and Github

mahesh-panchal

merqury.fk

FastK based version of Merqury

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

multi-package-containers

Testing building mulled containers for multi-requirement tools.

multiqc_testdata

Test data for MultiQC. See https://github.com/ewels/MultiQC

my-docker-compose-template

Template for testing docker compose under Gitpod

nbis_hic_curation_course_2022

nbis_project_template

Personal template for making and describing how to do reproducible NBIS support projects

nextflow

A DSL for data-driven computational pipelines

nextflow-code-clinic

A website to help workshop participants improve and develop their Nextflow workflows

nextflow-docker-actions-test

A workflow to figure out what's going on under the hood in docker based actions.

nextflow-fastqc-quarto

Using Quarto within Nextflow to make a MultiQC report

nextflow-novice

This repository will soon be archived, to merge contribution with https://github.com/carpentries-incubator/workflows-nextflow

nextflow-quarto-website

Attempt at making a website with quarto using Nextflow as a manager

nextflow-selection-workflow

nextflow-website

Nextflow public web site

nextflow_conditional_builddb

A Nextflow DSL2 workflow testing conditional database building

nextflow_sandbox

A playground to explore how to implement things in Nextflow and nf-core