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3d_mri_gan

GAN for image-to-image translation of 3D T1w and T2w anatomical MR images

abcd-hcp-pipeline

bids application for processing functional MRI data, robust to scanner, acquisition and age variability.

bids_nordic_wrapper

bruker

BrkRaw: A comprehensive tool to access raw Bruker Biospin MRI data

cabinet

cifti-connectivity

Script to generate correlation matrices from BOLD dense or parcellated time series data.

daic2hcp

tool for projecting preprocessed volumetric MR data from the DAIC onto HCP grayordinates

dcan-hcp

The DCAN Lab's version of the minimal preprocessing pipeline for the Human Connectome Project

dcan-infant-pipeline

The actual pipeline code, based on hcp, for human infants

dcan-macaque-pipeline

The actual pipeline code, based on hcp, for non-human-primates - sp macaques.

dcan_bold_processing

functional connectivity preprocessing for resting state fMRI outputs of the dcan-fmri-pipelines

dcan_rtd

dcm2bids

Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure

dcm2bids3_nordic_wrapper

dcm2niix

dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC

executivesummary

quality control images / html viewer for the dcan-fmri-pipelines

external-software

Tools needed for the DCAN Labs pipelines that we didn't write.

fmriprep

fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

fmriprep-rodents

fMRIPrep for Rodents

hcppipelines

Processing pipelines for the HCP

infant-abcd-bids-pipeline

Human infant pipeline, based on abcd-hcp-pipeline, to process fMRI data.

msi_helpers

my-first-rtd

A sample repository for use in the BioData Club DIY Documentation Workshop

nhp-abcd-bids-pipeline

Non-human primate (i.e., macaque) pipeline, based on abcd-hcp-pipeline, to process fMRI data.

nibabies

Processing tools for magnetic resonance images of infant brains

sdcflows

Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes

smriprep

Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)

tedana

TE-dependent analysis of multi-echo fMRI

templateflow

The Zone of templates

xcpd_build

Builds a base docker image for xcp-d