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academicpages.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

ads1-slides

Slides for Algorithms for DNA Sequencing Coursera class

asgiref

ASGI specification and utilities

atac_dnase_pipelines

ATAC-seq and DNase-seq processing pipeline

awesome-deep-learning-papers

The most cited deep learning papers

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

bamscale

BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy visualization of commonly used DNA-seq capture based methods.

bda_r_demos

Bayesian Data Analysis demos for R

bedr

bioinformatics-one-liners

Bioinformatics one liners from Ming Tang

book-genekitr

📚 Book for Genekitr

build-your-own-mint

Build your own personal finance analytics using Plaid, Google Sheets and CircleCI.

cellscape

Visualization tool for integrating single cell phylogeny with genomic content to clearly display evolutionary progression and tumour heterogeneity.

cellxgene

An interactive explorer for single-cell transcriptomics data

cheatsheets

CheatSheet for Linux commands etc.

chip-seq-pipeline2

ENCODE ChIP-seq pipeline

chipline

ChIP-seq analysis pipeline

clusterprofiler

:bar_chart:statistical analysis and visualization of functional profiles for genes and gene clusters

code_snippets

complexheatmap

Make Complex Heatmaps

crispranalyzer

CRISPRAnalyzeR: interactive analysis, annotation and documentation of pooled CRISPR screens

crispresso2

Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments

darts

Deep-learning Augmented RNA-seq analysis of Transcript Splicing

datacamp-community-tutorials

Tutorials for DataCamp (www.datacamp.com)

deep-learning-with-python-notebooks

Jupyter notebooks for the code samples of the book "Deep Learning with Python"

deepbindtokeras

Convert DeepBind models to Keras

deepcrispr

deepdow

Portfolio optimization with deep learning.

deephf

Core code for the DeepHF prediction tool

deeplearningpython35

neuralnetworksanddeeplearning.com integrated scripts for Python 3.5.2 and Theano with CUDA support