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ericjster avatar ericjster commented on July 19, 2024 1

You should examine the python code, bhtsne.py, it is just a small wrapper.
Note that the executable (bh_tsne.exe) should be in the same directory as bhtsne.py.
There exists a function bg_tsne(workdir) but you probably do want to use run_bh_tsne so you can set parameters. You can also use from the command line, e.g. "python bhtsne.py -i mydata.tsv -o mytsne.tsv --use_pca".
BTW I just used it on a a data set with 154K rows x 22 columns. Mapping to 2 dimensions took 1 hour, and to 3 dimensions took 2 hours. The sklearn implementation failed immediately.

from bhtsne.

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