lvclark Goto Github PK

16s-rdna-dada2-pipeline

dada2 Nextflow pipeline

2018-09-20-illinois

2019-09-26-illinois

adegenet

adegenet: a R package for the multivariate analysis of genetic markers

bioc-intro

Bioconductor data science introduction

covid19champaign

Little wrapper function to plot daily COVID-19 cases

cpsc499-fall2018-studyguide

Collaborative study guide for Oct. 23 midterm

cpsc499_fall18_test

Example repository for class

cpsc499_fall_2018

Course materials for R programming and bioinformatics

dd5echarsheet

Dungeons & Dragons 5e Stat and Roll Mod Calculator

epinano

Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)

fibertools-rs

Tools for fiberseq data written in rust.

gapit3

Genome Association Predict Integrate Tools

gbs-snp-crop

gwaspoly

GWAS software that can handle autopolyploids

h3abionet-sops

Standard operating procedures for H3ABionet data processing and analyses

h3agwas

GWAS Pipeline for H3Africa

isoformswitchanalyzer

An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)

lab11gene

R package skeleton for CPSC499 lab 11

labmeeting

Demonstration repository for lab meeting

lvclark.github.io

My website

lvclark.r-universe.dev

List of packages for R-universe

metachar

Custom character sheets for tabletop gaming

minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences

miscanthus

Miscanthus traits

paralog_id

Exploration and testing of methods to identify paralogs in GBS data

polyrad

Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝

polyradtutorials

Supplementary tutorials for polyRAD

polysat

polysat 1.7: tools for polyploid microsatellite analysis

pyseer

SEER, reimplemented in python 🐍🔮