Comments (3)
yes. it seems a network problem. The code tries to download the sdf file but failed.
you probably have to prepare the .pdb, and .sdf file yourself.
from tankbind.
hello, another question about the supported protein structure, does tankbind currently support the protein structure predicted by AlphaFold?
from tankbind.
kind of. I think the result won't be very bad. but, we haven't test its performance with AlphaFold structure.
from tankbind.
Related Issues (20)
- Choice of binding site or whole protein docking? HOT 1
- How to segment the protein with functional blocks? HOT 4
- Question about Evaluation Script HOT 2
- Is the ligand RMSD computed without hydrogen HOT 5
- Matrix dimension error when I am trying to inference HOT 12
- Issue of affinity evaluation HOT 2
- Strange Molecular's pose output HOT 2
- Reproduction of Model Training
- Installation problems: libtorch_cuda_cu.so not found HOT 5
- The exact number of PDBBind training set HOT 2
- run model(data) error HOT 6
- A problem when building construction dataset
- self_dock.pt vs. re_dock.pt
- M1 Mac optimisation
- Requesting list of unseen receptors and scripts for filtering HOT 2
- RuntimeError: mat1 and mat2 shapes cannot be multiplied (185x18 and 19x56) HOT 1
- ImportError: No module named 'torch_ext'
- apr22_pdbbind_gvp_pocket_radius20 HOT 1
- How to solve the matrix mismatch in testset_ evaluation_clean.ipynb HOT 1
- The following problem arise with the p2rank in construction_PDBbind_training_and_test_dataset
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from tankbind.