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Folder 'preprocessing' contains scripts for preparing datasets in a format suitable as input to BERT (https://github.com/google-research/bert) and BERT-NER (https://github.com/kyzhouhzau/BERT-NER).

Folder 'bert_pretraining' contains scripts for pretraining (fine tuning) BERT.

Folder 'bert-ner' contains scripts for fine-tuning BERT-NER, scripts for analysis of evaluation results, and scripts for correction of the performance evaluation (that needs to be perfromed due to the differences in the labeling procedure). 

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