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courses

Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1

dataanalysis

The lecture slides for Coursera's Data Analysis class

datasciencecoursera

datasharing

The Leek group guide to data sharing

dotdotdot

Example vignette for dotdotdot software

harvardxcourse

Introduction to Linear Models and Matrix Algebra Course by Rafael Irizarry and Michael Love. http://genomicsclass.github.io/book/

indra

INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.

instant-datascience-data-science-intro-000

leidenbase

monocle3

numpy

The fundamental package for scientific computing with Python.

patchwork

The Composer of ggplots

programmingassignment2

Repository for Programming Assignment 2 for R Programming on Coursera

project001

My first project on github!

pysb

Python framework for Systems Biology modeling

rasmodel

RAS Executable Model (REM)

scalign

A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batches

scanpy

Single-Cell Analysis in Python. Scales to >1M cells.

sccatch

Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data

scrna.seq.course

Analysis of single cell RNA-seq data course

scscope

seurat

R toolkit for single cell genomics

single-cell-review

single-cell-tutorial

Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

singlecelldb

An actionable database of publicly available single-cell RNA-seq data

swirl_courses

:mortar_board: A collection of interactive courses for the swirl R package.