luisgls Goto Github PK
Name: Luis Zapata
Type: User
Company: ICR
Bio: ICR fellow, Team Lead on Cancer Evolution and Immunogenomics
Location: London
Luis Zapata's Projects
cdriver
cDriver R package for finding candidate driver genes in cancers
corona
Analysis of the causes of case fatality rate heterogeneity across countries
dnds_tools
Compilation of scripts/notes for dNdS
dndssimulator
dNdS Simulator uses R to simulate a stochastic branching process with a set of genotypes and phenotypes per cell. The main advantage of the model is that simulates immunoediting by introducing immunogenic and escape mutations as well as driver and passenger mutations
music2
identifying mutational significance in cancer genomes
pacbioeda
Python scripts for Exploratory Data Ananlysis of Pacific Biosciences sequence data
sismo
Simulate somatic mutations based on trinucleotide context
soprano
SelectiOn in PRotein ANnotated regiOns. Adapted dN/dS based method to detect selection in specific protein regions
ssb_selection
Detect natural selection in cancer genomes
zapata2022_natgen
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