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Lucy Jiménez

Lucy Jiménez's Projects

asv icon asv

Airspeed Velocity: A simple Python benchmarking tool with web-based reporting

basic_simulation_training icon basic_simulation_training

A document for the Living Journal of Computational Molecular Science (LiveCoMS) which describes basic training for molecular simulations (oriented towards molecular dynamics (MD)), providing some training itself and linking out to other helpful information elsewhere. The intent is that this provide information on the prerequisites which will be required for understanding/following many of the other "best practices" documents being prepared.

chemical_vae icon chemical_vae

Code for 10.1021/acscentsci.7b00572, now running on Keras 2.0 and Tensorflow

cuml icon cuml

cuML - RAPIDS Machine Learning Library

fragmenstein icon fragmenstein

Scaffold hopping between bound compounds by stitching them together like a reanimated corpse.

jax-unirep icon jax-unirep

Reimplementation of the UniRep protein featurization model.

mdanalysis icon mdanalysis

MDAnalysis is a Python library to analyze molecular dynamics trajectories.

openmm icon openmm

OpenMM is a toolkit for molecular simulation using high performance GPU code.

pandas icon pandas

Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more

pyladies icon pyladies

PyLadies is a global mentorship group focused on helping more marginalized genders become active participants & leads in the Python open-source community.

pymc icon pymc

Probabilistic Programming in Python: Bayesian Modeling and Probabilistic Machine Learning with Aesara

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