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bash-script-dna-sequence

Linux command-line to analyse next-generation sequencing (NGS) data

crop_gdd_python

Applying Python to calculate plot GDD, accumulated GDD and daylength

dna-methylation-assessment

Applying R and Bioconductor to assess DNA Methylation

funcscan

(Meta-)genome screening for functional and natural product gene sequences

fusion

hpc-starter-guide

Access beginner-friendly tutorials on SSH for secure remote access and SLURM for job scheduling and management.

isb_course_2022

Materials and presentation for the 2022 ISB Microbiome course.

mag

Assembly and binning of metagenomes

masterarbeit

Leveraging WES short reads for PAN-EXOME creation and analysis.

mycosnp-nf

CDCgov/mycosnp-nf

prodigy

Repository containing various scripts to predict the binding affinity of protein-protein complexes from structure

prodigy-lig

Prediction of Protein-Small molecule binding affinities

protein-binding-energy-predicts-antibody-antigen-interaction-interfaces

Characterizing antibody-antigen interaction interfaces

r_bioinformatics_assignments

rna_snakemake

rnaseq_nextflow

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

tutorialsvcalling