Name: Lori Shapiro
Type: User
Company: North Carolina State University
Bio: Post Doctoral Scientist
Microbial pathogen evolution
Plant-microbe interactions
Location: Working Remotely from Boston, MA
Blog: https://sites.google.com/view/lorirshapiro/home?authuser=2
Lori Shapiro's Projects
Software Carpentry workshop at Harvard
Pipeline for computing OTU tables from 16S or ITS amplicon sequencing data.
Scripts to compare bacterial genome annotations
A curated list of delightful Bash scripts and resources.
My collection of light bioinformatics analysis pipelines for specific tasks
BWK awk modified for biological data
RStudio Cheat Sheets
16S analysis of cucurbita beetle + bee microbiomes
The Data Carpentry website repository
Game to teach concepts about mutation, diversity, selection, and evolution
A robot powered training repository :robot:
A living, breathing community exploration of the gganimate R package. A rOpenSci #ozunconf2018 project
Set of useful functions and scripts for analyzing amplicon Miseq data.
Sharing with friends
The population genetics of drug resistance in Mycobacterium tuberculosis
A flexible tool to identify mobile genetic elements and their sites of insertions from short-read whole-genome sequencing data.
Utility functions for deep-sequence phylogenetic analyses at the population level with phyloscanner
Population genetics notes
Scripts to calculate population genetics statistics
A functional programming toolkit for R
:notebook: Data Carpentry R lessons on ecology.
A fresh approach to string manipulation in R
Helpful scripts for downloading, processing, and manipulating 16S data
Sample data and notebooks for VIZBI 2015 tutorial session
materials for the workshop on UNIX command line